{
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  "Title": "Random Fields on Metric Graphs",
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  "Authors@R": "c(\nperson(\"David\", \"Bolin\", email = \"davidbolin@gmail.com\", role = c(\"cre\", \"aut\")),\nperson(\"Alexandre\", \"Simas\", email = \"alexandre.impa@gmail.com\", role = \"aut\"),\nperson(\"Jonas\", \"Wallin\", email = \"jonas.wallin81@gmail.com\", role = \"aut\"))",
  "Maintainer": "David Bolin <davidbolin@gmail.com>",
  "Description": "Facilitates creation and manipulation of metric graphs,\nsuch as street or river networks. Further facilitates\noperations and visualizations of data on metric graphs, and the\ncreation of a large class of random fields and stochastic\npartial differential equations on such spaces. These random\nfields can be used for simulation, prediction and inference. In\nparticular, linear mixed effects models including random field\ncomponents can be fitted to data based on computationally\nefficient sparse matrix representations. Interfaces to the R\npackages 'INLA' and 'inlabru' are also provided, which\nfacilitate working with Bayesian statistical models on metric\ngraphs. The main references for the methods are Bolin, Simas\nand Wallin (2024) <doi:10.3150/23-BEJ1647>, Bolin, Kovacs,\nKumar and Simas (2023) <doi:10.1090/mcom/3929> and Bolin, Simas\nand Wallin (2023) <doi:10.48550/arXiv.2304.03190> and\n<doi:10.48550/arXiv.2304.10372>.",
  "License": "GPL (>=2)",
  "Additional_repositories": "https://inla.r-inla-download.org/R/testing",
  "BugReports": "https://github.com/davidbolin/MetricGraph/issues",
  "URL": "https://davidbolin.github.io/MetricGraph/",
  "Copyright": "The R package and code, and the main programs, were written\nby and are Copyright by David Bolin, Alexandre B. Simas and\nJonas Wallin, and are redistributable under the GNU Public\nLicense, version 2 or later. The package also includes partial\ncodes from another package, which was deprecated in Oct-2023,\nand whose codes are under the GPL-2 license. For details see\nthe COPYRIGHTS file.",
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  "Date/Publication": "2026-06-05 06:45:00 UTC",
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    "logo_lines",
    "make_Q_euler",
    "make_Q_spacetime",
    "match_mesh_data",
    "metric_graph",
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    "posterior_crossvalidation",
    "posterior_crossvalidation_loo",
    "precompute_lgcp_graph",
    "process_rspde_predictions",
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    "sample_spde",
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    "simulate_parallel",
    "simulate_spacetime",
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    "spde_variance",
    "stlpp.to.graph",
    "summarise",
    "t",
    "update_graph"
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      "object": "pems",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "pems_repl",
      "title": "Traffic speed data with replicates from San Jose, California",
      "object": "pems_repl",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
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      "page": "MetricGraph-package",
      "title": "Gaussian processes on metric graphs",
      "topics": [
        "MetricGraph-package",
        "MetricGraph"
      ]
    },
    {
      "page": "augment.graph_lme",
      "title": "Augment data with information from a 'graph_lme' object",
      "topics": [
        "augment",
        "augment.graph_lme"
      ]
    },
    {
      "page": "bru_mapper.inla_metric_graph_spde",
      "title": "Metric graph 'inlabru' mapper",
      "topics": [
        "bru_get_mapper.inla_metric_graph_spde",
        "bru_mapper.inla_metric_graph_spde",
        "ibm_jacobian.bru_mapper_inla_metric_graph_spde",
        "ibm_n.bru_mapper_inla_metric_graph_spde",
        "ibm_values.bru_mapper_inla_metric_graph_spde"
      ]
    },
    {
      "page": "cross_validation",
      "title": "Perform cross-validation on a list of fitted inlabru models on metric graphs.",
      "topics": [
        "cross_validation"
      ]
    },
    {
      "page": "drop_na.metric_graph_data",
      "title": "A version of 'tidyr::drop_na()' function for datasets on metric graphs",
      "topics": [
        "drop_na",
        "drop_na.metric_graph_data"
      ]
    },
    {
      "page": "exp_covariance",
      "title": "Exponential covariance function",
      "topics": [
        "exp_covariance"
      ]
    },
    {
      "page": "filter.metric_graph_data",
      "title": "A version of 'dplyr::filter()' function for datasets on metric graphs",
      "topics": [
        "filter",
        "filter.metric_graph_data"
      ]
    },
    {
      "page": "gg_df.metric_graph_spde_result",
      "title": "Data frame for metric_graph_spde_result objects to be used in 'ggplot2'",
      "topics": [
        "gg_df",
        "gg_df.metric_graph_spde_result"
      ]
    },
    {
      "page": "glance.graph_lme",
      "title": "Glance at a 'graph_lme' object",
      "topics": [
        "glance",
        "glance.graph_lme"
      ]
    },
    {
      "page": "graph_bru_process_data",
      "title": "Prepare data frames or data lists to be used with 'inlabru' in metric graphs",
      "topics": [
        "graph_bru_process_data"
      ]
    },
    {
      "page": "graph_data_spde",
      "title": "Data extraction for 'spde' models",
      "topics": [
        "graph_data_spde"
      ]
    },
    {
      "page": "graph_lgcp_sim",
      "title": "Simulate log-Gaussian Cox processes on metric graphs",
      "topics": [
        "graph_lgcp_sim"
      ]
    },
    {
      "page": "graph_lme",
      "title": "Metric graph linear mixed effects models",
      "topics": [
        "graph_lme"
      ]
    },
    {
      "page": "graph_spde",
      "title": "'INLA' implementation of Whittle-Matérn fields for metric graphs",
      "topics": [
        "graph_spde"
      ]
    },
    {
      "page": "graph_spde_basis",
      "title": "Deprecated - Observation/prediction matrices for 'SPDE' models",
      "topics": [
        "graph_spde_basis"
      ]
    },
    {
      "page": "graph_spde_make_A",
      "title": "Deprecated - Observation/prediction matrices for 'SPDE' models",
      "topics": [
        "graph_spde_make_A"
      ]
    },
    {
      "page": "graph_starting_values",
      "title": "Starting values for random field models on metric graphs",
      "topics": [
        "graph_starting_values"
      ]
    },
    {
      "page": "lgcp_graph",
      "title": "Fit log-Gaussian Cox process models on metric graphs",
      "topics": [
        "lgcp_graph"
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    },
    {
      "page": "linnet.to.graph",
      "title": "Convert a 'linnet' object to a metric graph object",
      "topics": [
        "linnet.to.graph"
      ]
    },
    {
      "page": "logo_lines",
      "title": "Create lines for package name",
      "topics": [
        "logo_lines"
      ]
    },
    {
      "page": "make_Q_euler",
      "title": "Space-time precision operator Euler discretization",
      "topics": [
        "make_Q_euler"
      ]
    },
    {
      "page": "make_Q_spacetime",
      "title": "Space-time precision operator discretization",
      "topics": [
        "make_Q_spacetime"
      ]
    },
    {
      "page": "match_mesh_data",
      "title": "Match Data Frame Rows to Graph Mesh Order",
      "topics": [
        "match_mesh_data"
      ]
    },
    {
      "page": "metric_graph",
      "title": "Metric graph",
      "topics": [
        "metric_graph"
      ]
    },
    {
      "page": "mutate.metric_graph_data",
      "title": "A version of 'dplyr::mutate()' function for datasets on metric graphs",
      "topics": [
        "mutate",
        "mutate.metric_graph_data"
      ]
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      "page": "pems",
      "title": "Traffic speed data from San Jose, California",
      "topics": [
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    },
    {
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      "title": "Traffic speed data with replicates from San Jose, California",
      "topics": [
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      "title": "Plot of predicted values with 'inlabru'",
      "topics": [
        "plot.graph_bru_pred"
      ]
    },
    {
      "page": "plot.graph_bru_proc_pred",
      "title": "Plot of processed predicted values with 'inlabru'",
      "topics": [
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      ]
    },
    {
      "page": "posterior_crossvalidation",
      "title": "Cross-validation for 'graph_lme' models assuming observations at the vertices of metric graphs",
      "topics": [
        "posterior_crossvalidation"
      ]
    },
    {
      "page": "posterior_crossvalidation_loo",
      "title": "Leave-one-out pseudo-crossvalidation for 'graph_lme' models assuming observations at the vertices of metric graphs",
      "topics": [
        "posterior_crossvalidation_loo"
      ]
    },
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      "title": "Precompute expensive quantities for efficient LGCP model fitting",
      "topics": [
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      ]
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      "page": "predict.graph_lme",
      "title": "Prediction for a mixed effects regression model on a metric graph",
      "topics": [
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      ]
    },
    {
      "page": "predict.inla_metric_graph_spde",
      "title": "Predict method for 'inlabru' fits on Metric Graphs",
      "topics": [
        "predict.inla_metric_graph_spde"
      ]
    },
    {
      "page": "predict.rspde_metric_graph",
      "title": "Predict method for 'inlabru' fits on Metric Graphs for 'rSPDE' models",
      "topics": [
        "predict.rspde_metric_graph"
      ]
    },
    {
      "page": "process_rspde_predictions",
      "title": "Process predictions of 'rspde_metric_graph' objects obtained by using 'inlabru'",
      "topics": [
        "process_rspde_predictions"
      ]
    },
    {
      "page": "psp.to.graph",
      "title": "Convert a 'psp' object to a metric graph object",
      "topics": [
        "psp.to.graph"
      ]
    },
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